I guess you've tried recalibrating?
When you rotate the Leap 180 degrees (and hold the hand above it briefly to flip the detected orientation), does the problem persist?
Same behavior with 2.0.3 and 2.0.4? Features in 2.0.4 included reduced jitter of tools and allowing tools to initialize backwards. That shouldn't affect this case, but let's double-check that.
You can also use the "Report Software Issue" button to send us an image dump so our tool tracking engineers can look at this.